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I am currently going to school to become a vet tech and I work as a vet assistant at an animal hospital right now. This sounds like a trigger more than anything. Something at night is triggering her symptoms. Have you tried a humidifier in the room she sleeps in? Have you changed your house air filters in the last year? Have you steam cleaned your carpets? Have you tried different diets? There are so many things that can trigger this. She may have an allergy to a dust in your house which is why it's important to change out your filters and clean your carpets. It can also be caused by the food she eats. Some dogs have severe reactions to chicken and certain types of kibble. Or the air might be too dry. These are only a few things I think might be causing this. Most veterinarians automatically think this to be a type of 'kennel cough' and stress you to vaccinate her with the bordatella vaccine. This is untrue if she does not hang out with other dogs. The only other thing I can think of is she may have inhaled some food into her lungs, in which the only thing you can do is put her on oxygen, which can only be done at the vet. At that point, nature will take its course in bringing up the foreign material from the lungs.I wish you the best of luck in finding out what is wrong! I would love an update on how she's doing! I hate seeing or hearing of animals in distress.
Might have missed if this was mentioned but a lot of times problems just at night with lying down can be a sign of heart issues. It can be slightly enlarged and they may need somethig like a diuretic or somethig more serious. Common in dobes, not sure about mals?Sounds just like my friends sheltie who would cough at night, be anxious etc. finally got diagnosis of enlarged heart and is now sleeping.