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That is such an awesome question! I reckon wings would be dominant and earth recessive, unicorn probably dominant, I reckon the 'extras' are dominant? xxx
G3 Genetics were really questionable. If I remember, we never saw a single male pony in that line, in figures or in animation. o_O There of course wasn't any cloning either...
Well... according to that dreaded Newborn Cuties animation, Sweetie Belle was born from a double rainbow. Also, in The Runaway Rainbow, not only is the rainbow all the wrong colors, but if they don't get the first rainbow of the year to appear, Rainbow Dash's mane goes white. The only solution I can come up with is G3 ponies are made of 100% pure magic and are born in the event of a double rainbow, which is rare in their world. Somehow the G1 magic mirror doesn't sound crazy anymore, does it?