If the plastic is not stained, I've heard people try CLR or other rust remover to clean out the rust. I've always had good results with oxiclean, or you could use baking soda and scrub. I don't think the rust would sunfade since it's not ink.
I have heard that age spots do return on their own sometimes after fading. I more or less consider these marks permanent so maybe someone who sunfades more often than I can help.
Are you using a hair bleaching cream as well, or just setting the pony out?